Fluffy Japanese Cotton Cheesecake Cupcakes

I still remember the first time I baked Japanese Cotton Cupcakes — the moment I pulled them from the oven, their delicate tops trembled slightly, and a soft cloud of steam escaped into the air. These little cakes are a dream come true for anyone who loves the lightness of a soufflé and the sweetness of a cupcake. They are incredibly fluffy, moist, and irresistibly airy — almost like eating a cloud that melts in your mouth. Every bite carries the gentle sweetness of sugar and the comforting aroma of vanilla, balanced with a light, creamy richness that’s simply divine.

What I love most about these cupcakes is their unique texture. Unlike traditional butter cupcakes, Japanese Cotton Cupcakes are made with a base similar to a Japanese cheesecake — a combination of whipped egg whites, cream cheese, and milk that gives them that signature cotton-soft texture. They’re elegant yet simple, and you don’t need any fancy ingredients to make them. Every time I bake a batch, I’m reminded of the art of Japanese baking — precision, patience, and beauty in simplicity.

You will absolutely love this recipe because it’s perfect for any occasion. Whether you’re hosting an afternoon tea, preparing a dessert for family, or simply craving something light and comforting, these cupcakes are always a hit. They are not overly sweet, which makes them ideal for both kids and adults. You can enjoy them plain, dust them with powdered sugar, or top them with fresh fruit and whipped cream for an elegant touch.

These cupcakes are wonderfully versatile. You can easily adjust the flavors — add matcha for a green tea version, a hint of lemon zest for brightness, or even cocoa powder for a chocolate twist. They also stay soft and moist for days when stored properly, making them perfect for gifting or make-ahead desserts.

One of the things I appreciate most about this recipe is how affordable it is. The ingredients are simple — cream cheese, eggs, sugar, milk, butter, and flour — all staples in any baker’s kitchen. You don’t need special tools or expensive additions, yet the result feels luxurious and delicate.

Ingredients for Japanese Cotton Cupcakes:

  • 125 g cream cheese, softened

  • 40 g unsalted butter

  • 60 ml milk

  • 3 large eggs, separated

  • 60 g cake flour

  • ¼ tsp cream of tartar

  • 80 g granulated sugar

  • 1 tsp vanilla extract

  • A pinch of salt

How to Prepare This Recipe 

Making Japanese Cotton Cupcakes may look delicate, but the process is simple and soothing once you understand each step. These light, jiggly cupcakes rely on gentle mixing and controlled baking to achieve their signature airy texture. With the right technique, you’ll get beautifully risen cupcakes that are soft as a cloud and subtly sweet — perfect for any occasion.

Step-by-Step Instructions for Preparation

Step 1: Prepare the equipment
Before starting, preheat your oven to 150°C (300°F). Line a muffin tin with cupcake liners and place the tin inside a larger deep baking tray. You will later fill the outer tray with hot water to create a water bath, which helps bake the cupcakes gently without cracking or collapsing. This step ensures a moist, smooth texture.

Step 2: Make the cream cheese mixture
In a heatproof bowl, combine cream cheese, unsalted butter, and milk. Place the bowl over a pot of simmering water (double boiler method). Stir slowly with a whisk or spatula until the butter and cream cheese melt completely into a smooth mixture. Remove the bowl from heat and let it cool slightly before adding other ingredients.

Step 3: Add the egg yolks and flavoring
Once the mixture has cooled a bit, whisk in the egg yolks one by one until well blended. Then, sift in the cake flour and salt. Stir gently until the batter becomes smooth and lump-free. Add the vanilla extract and mix again. The batter should be silky, not thick — this will ensure a light texture later.

Step 4: Prepare the meringue
In a clean mixing bowl, beat the egg whites using an electric mixer on medium speed until foamy. Add the cream of tartar and continue beating until soft peaks form. Gradually add the granulated sugar, about one tablespoon at a time, while beating continuously. Increase to high speed and beat until the meringue reaches stiff peaks — glossy, stable, and able to hold its shape.

Step 5: Combine the batters
Take one-third of the meringue and gently fold it into the cream cheese mixture using a spatula. This will lighten the batter and make it easier to incorporate the remaining meringue. Then, fold in the rest of the meringue in two additions, using light, upward strokes. Do not overmix — the air in the meringue is what makes the cupcakes rise and stay fluffy.

Step 6: Fill the cupcake liners
Spoon the batter evenly into the prepared cupcake liners, filling them about three-quarters full. Tap the tray gently on the counter to remove large air bubbles, ensuring even baking and a fine crumb.

Step 7: Bake with a water bath
Pour hot water into the outer baking tray until it reaches about one-third the height of the muffin tin. Carefully place the tray in the preheated oven. Bake the cupcakes at 150°C (300°F) for 25–30 minutes or until they are lightly golden on top and set in the center. To check, gently touch the surface — it should spring back lightly.

Step 8: Cool gradually
Turn off the oven and leave the cupcakes inside with the door slightly open for about 10 minutes. This gradual cooling prevents them from shrinking too quickly. Afterward, transfer the cupcakes to a wire rack and let them cool completely before serving.

Quick and Easy

Although the process sounds detailed, it’s quite manageable. The batter comes together quickly, and the water bath method makes the cupcakes almost foolproof. Even if you’re new to Japanese-style baking, this recipe gives excellent results without complicated tools or professional skills.

Customizable

These cupcakes are a fantastic base for flavor variations. For a matcha version, replace 1 tablespoon of flour with matcha powder. For a chocolate twist, add 1 tablespoon of unsweetened cocoa powder. You can also fold in a teaspoon of lemon zest for a bright, citrus flavor or serve them with whipped cream and berries for an elegant finish.

Popular with Many People

Japanese Cotton Cupcakes are beloved for their melt-in-your-mouth texture and refined sweetness. They are especially popular at gatherings, baby showers, and tea parties because they are light enough to enjoy after a full meal. Every bite feels soft, moist, and comforting — the perfect treat that appeals to all ages.

Once you bake them, you’ll understand why these cupcakes are such a favorite around the world. They’re delicate, beautiful, and incredibly satisfying — the kind of dessert that makes everyone smile.

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Fluffy Japanese Cotton Cheesecake Cupcakes

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These Japanese Cotton Cupcakes are the perfect fusion of lightness and flavor. Their soft, airy texture makes them a delight to eat, and their subtle sweetness pairs beautifully with tea or coffee. Made with cream cheese, eggs, and milk, they deliver the gentle richness of a cheesecake in the form of a fluffy cupcake. Easy to make and beautifully delicate, these treats bring a touch of elegance to any occasion.

  • Author: Lura Skye
  • Prep Time: 20
  • Cook Time: 30
  • Total Time: 50 minutes
  • Yield: 12 1x

Ingredients

Scale
  • 125 g cream cheese, softened
  • 40 g unsalted butter
  • 60 ml milk
  • 3 large eggs, separated
  • 60 g cake flour
  • ¼ tsp cream of tartar
  • 80 g granulated sugar
  • 1 tsp vanilla extract
  • A pinch of salt

Instructions

  1. Preheat the oven to 150°C (300°F). Line a muffin tin with cupcake liners and set it inside a deep baking tray for a water bath.
  2. Melt the mixture: In a heatproof bowl over simmering water, combine cream cheese, butter, and milk. Stir until smooth and remove from heat. Let it cool slightly.
  3. Add egg yolks and dry ingredients: Whisk in the egg yolks one by one. Sift in cake flour and salt. Stir gently until smooth, then add vanilla extract.
  4. Prepare the meringue: Beat egg whites with an electric mixer until foamy. Add cream of tartar and beat until soft peaks form. Gradually add sugar and continue beating until stiff, glossy peaks appear.
  5. Combine the mixtures: Add one-third of the meringue to the cream cheese batter and fold gently. Incorporate the remaining meringue in two additions, folding slowly to retain air.
  6. Fill the liners: Spoon the batter into the prepared liners, filling each about three-quarters full. Tap the tray lightly to remove air bubbles.
  7. Bake with a water bath: Pour hot water into the outer tray until it reaches one-third the height of the muffin tin. Bake for 25–30 minutes or until the tops are lightly golden and set.
  8. Cool gradually: Turn off the oven, open the door slightly, and leave the cupcakes inside for 10 minutes. Then remove and cool completely on a wire rack before serving.

Notes

Avoid overmixing the batter; this helps maintain the light texture.

If using all-purpose flour, replace 1 tablespoon with cornstarch per ½ cup to achieve a similar softness.

For variation, you can add 1 tablespoon of matcha powder or cocoa powder.

Store cupcakes in an airtight container at room temperature for up to three days.

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FAQs 

Q1: Why did my Japanese Cotton Cupcakes collapse after baking?
The most common reason is overmixing the batter or opening the oven door too early. These cupcakes are very delicate and rely on air bubbles in the meringue for their structure. To prevent collapse, fold the meringue gently, avoid overbeating the egg whites, and let the cupcakes cool gradually in the oven before removing them.

Q2: Can I bake them without a water bath?
While it’s possible, a water bath helps maintain even heat and moisture, giving the cupcakes their signature soft and cottony texture. Without it, the cakes may rise too quickly, crack, or become dry. If you skip it, reduce the oven temperature slightly and monitor closely.

Q3: Can I make these cupcakes ahead of time?
Yes! These cupcakes stay soft and moist for up to three days when stored in an airtight container at room temperature. For longer storage, refrigerate them and bring them to room temperature before serving.

Q4: Can I use all-purpose flour instead of cake flour?
You can, but the texture will be slightly denser. To mimic cake flour, mix 1 cup of all-purpose flour with 2 tablespoons of cornstarch for every cup required.

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